Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs7110486 chr11:34879987 T/A 8.29E-7 98 14.85 14.2 8.8 KM Plot
SKCM rs7180853 chr15:41437606 T/C 0.00011 98 12.58 19.43 15.63 KM Plot
SKCM rs71890844 chr12:63382365 TTC/T 2.4E-7 100 15.13 14.3 8.8 KM Plot
SKCM rs72110661 chr12:63390069 AGTATTAGTACATGG/A 2.4E-7 100 15.13 14.3 8.8 KM Plot
SKCM rs72193917 chr11:64553060 CTTTTT/C 5.64E-7 101 14.7 15.73 8.8 KM Plot
SKCM rs7247155 chr19:48682026 T/G 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs72630464 chr15:85298126 G/A 1.01E-5 101 16.23 13.57 10.95 KM Plot
SKCM rs72665544 chr13:106574704 T/C 3.95E-5 98 15.3 13.63 4.73 KM Plot
SKCM rs72665545 chr13:106574774 A/G 3.35E-5 99 15.3 14.2 4.73 KM Plot
SKCM rs72703034 chr5:577101 C/T 0 99 15.02 13.4 6.33 KM Plot
SKCM rs72703042 chr5:579269 C/T 0 99 15.02 13.4 6.33 KM Plot
SKCM rs72703051 chr5:582997 G/A 0 101 15.13 12 6.33 KM Plot
SKCM rs72703064 chr5:587825 T/C 0 100 15.02 14.8 6.33 KM Plot
SKCM rs72703065 chr5:588123 C/A 0 100 15.02 14.8 6.33 KM Plot
SKCM rs72703070 chr5:590458 T/C 0 100 15.02 14.8 6.33 KM Plot